PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07640g01014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 846aa    MW: 94693.5 Da    PI: 6.4036
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07640g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23127228199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  Niben101Scf07640g01014.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 210
                               99*****************************7555555.59******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   ++++ +l+++++r+
  Niben101Scf07640g01014.1 211 VLFI--WNEKNQLLLGIRRA 228
                               ****..8899999****997 PP

2Auxin_resp116.22.9e-38253336183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++gv dldpvrW nS+Wrs+k
  Niben101Scf07640g01014.1 253 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGVGDLDPVRWANSHWRSVK 336
                               79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-49111256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-21126227No hitNo description
SMARTSM010192.4E-23127229IPR003340B3 DNA binding domain
PfamPF023623.1E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998127229IPR003340B3 DNA binding domain
PfamPF065071.3E-33253336IPR010525Auxin response factor
SuperFamilySSF542775.04E-7719794No hitNo description
PROSITE profilePS5174524.573720804IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MKLSTSGLSQ QPHEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTLQEQKDT YLPVELGIPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGVG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG TSYFQENNSD AINGMTWLRG EGCDQGPHLM NLQSFGMLPW  420
MQQRVDPTIL RNDLNQQYQA MLATGLQNFG SGDMLKQQLM QFQQPVQYLQ HASSHNPLLQ  480
QQQQQAMQQQ QQQQQAIHQH ILPAQTLMDN VQRQPQQQVG NQMNDQAHQP SYQEAYQISR  540
SQLQQKQPSN IPSQSFSKPD FADPNSKFAA SIAPSVIPTR LGSLCSEGSS SFLNFNSTGQ  600
QSVIMEQPPQ KSWMSKYGHS ELNAGSNSSL VPAYGKDTST SLETCSLDAQ NQNLFGANVD  660
SSGLLLPTTV SNVSTASIDA DMSAMPLGTS GFQNSLYGYV QDSSDLLHNA GQVDPLNATR  720
TFVKVYKSGS VGRSLDITRF NSYHELRQEL GQMFGIEGFL EDPQRSGWQL VFVDRENDVL  780
LLGDDPWEAF VNNVWYIKIL SPEDVQKLGK EEVESLNRGS LERMNSNSAD GRDFMSGLPS  840
IGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591635747388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789648.10.0PREDICTED: auxin response factor 8-like
RefseqXP_016464874.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLK9L8R30.0K9L8R3_TOBAC; Auxin response factor
STRINGSolyc03g031970.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8